5MAC	Lyase	date	Nov 03, 2016
title	Crystal Structure Of Decameric Methanococcoides Burtonii Rub Complexed With 2-Carboxyarabinitol Bisphosphate
authors	L.H.Gunn, K.Valegard, I.Andersson
compound		source
Molecule: Ribulose-1,5-Bisphosphate Carboxylase-Oxygenase T Chain: A, B, C, D, E Ec: 4.1.1.39 Engineered: Yes		Organism_scientific: Methanococcoides Burtonii Organism_taxid: 29291 Gene: Mbur_2322 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693
symmetry	Space Group: P 3 2 1	R_factor 0.189 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 273.760 273.760 96.740 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	CAP, CL, KCX, MG	enzyme	Lyase E.C.4.1.1.39 BRENDA
Gene	MBUR
Gene Ontology	Chain Function Process Component A, D, C, E, B
Primary reference	A Unique Structural Domain in Methanococcoides burtonii Rubisco Acts as a Small-subunit Mimic., Gunn LH, Valegard K, Andersson I, J Biol Chem. 2017 Jan 30. pii: jbc.M116.767145. doi: 10.1074/jbc.M116.767145. PMID:28154188

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (393 Kb) [Save to disk] Biological Unit Coordinates (5mac.pdb1.gz) 762 Kb LPC: Ligand-Protein Contacts for 5MAC CSU: Contacts of Structural Units for 5MAC Structure Factors (1819 Kb) Retrieve 5MAC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5MAC from S2C, [Save to disk] Re-refined 5mac structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5MAC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5MAC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mac_B] [5mac] [5mac_E] [5mac_A] [5mac_D] [5mac_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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