5MWF	Signaling Protein	date	Jan 18, 2017
title	Human Jagged2 C2-Egf2
authors	R.J.Suckling, P.A.Handford, S.M.Lea
compound		source
Molecule: Protein Jagged-2 Chain: A, B, C, D, E, F Synonym: Hj2, Jagged-2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Jag2 Expression_system: Drosophila Melanogaster Expression_system_common: Fruit Fly Expression_system_taxid: 7227 Expression_system_cell: Schneider 2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pexs2-2
symmetry	Space Group: P 1	R_factor 0.217 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.628 92.929 97.004 71.68 83.16 82.68
method	X-Ray Diffraction	resolution	2.80 Å
ligand	BMA, CA, CL, FUC, NAG	enzyme
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Structural and functional dissection of the interplay between lipid and Notch binding by human Notch ligands., Suckling RJ, Korona B, Whiteman P, Chillakuri C, Holt L, Handford PA, Lea SM, EMBO J. 2017 Aug 1;36(15):2204-2215. doi: 10.15252/embj.201796632. Epub 2017 Jun , 1. PMID:28572448

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk] Biological Unit Coordinates (5mwf.pdb1.gz) 50 Kb Biological Unit Coordinates (5mwf.pdb2.gz) 50 Kb Biological Unit Coordinates (5mwf.pdb3.gz) 48 Kb Biological Unit Coordinates (5mwf.pdb4.gz) 48 Kb Biological Unit Coordinates (5mwf.pdb5.gz) 47 Kb Biological Unit Coordinates (5mwf.pdb6.gz) 47 Kb LPC: Ligand-Protein Contacts for 5MWF CSU: Contacts of Structural Units for 5MWF Structure Factors (1982 Kb) Retrieve 5MWF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5MWF from S2C, [Save to disk] Re-refined 5mwf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5MWF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5MWF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mwf_C] [5mwf_A] [5mwf_F] [5mwf_D] [5mwf_E] [5mwf_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5MWF

Community annotation for 5MWF at PDBWiki (http://pdbwiki.org)

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