5THR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, A, B


E, F, D


I, G, H


Primary referenceCryo-EM structure of a CD4-bound open HIV-1 envelope trimer reveals structural rearrangements of the gp120 V1V2 loop., Wang H, Cohen AA, Galimidi RP, Gristick HB, Jensen GJ, Bjorkman PJ, Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):E7151-E7158. Epub 2016 Oct 31. PMID:27799557
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (472 Kb) [Save to disk]
  • Biological Unit Coordinates (5thr.pdb1.gz) 455 Kb
  • LPC: Ligand-Protein Contacts for 5THR
  • CSU: Contacts of Structural Units for 5THR
  • Retrieve 5THR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5THR from S2C, [Save to disk]
    • View 5THR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5thr] [5thr_A] [5thr_B] [5thr_C] [5thr_D] [5thr_E] [5thr_F] [5thr_G] [5thr_H] [5thr_I] [5thr_J] [5thr_K] [5thr_L] [5thr_M] [5thr_N] [5thr_O] [5thr_P] [5thr_Q] [5thr_R] [5thr_S] [5thr_T] [5thr_U]
  • SWISS-PROT database:
  • Domains found in 5THR: [IG_like] [IGv ] by SMART

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