5VYQ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 0FX, CL, EDO, EP1, FON, K, LI, NA, TYD enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceBiochemical Investigation of Rv3404c from Mycobacterium tuberculosis., Dunsirn MM, Thoden JB, Gilbert M, Holden HM, Biochemistry. 2017 Jul 25;56(29):3818-3825. doi: 10.1021/acs.biochem.7b00506., Epub 2017 Jul 14. PMID:28665588
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (5vyq.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 5VYQ
  • CSU: Contacts of Structural Units for 5VYQ
  • Structure Factors (2198 Kb)
  • Retrieve 5VYQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VYQ from S2C, [Save to disk]
  • Re-refined 5vyq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5VYQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vyq_A] [5vyq_B]
  • SWISS-PROT database:

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