5YDI Hydrolase date Sep 13, 2017
title Crystal Structure Of Acetylcholinesterase Catalytic Subunits Malaria Vector Anopheles Gambiae, New Crystal Packing
authors Q.Han, H.Guan, H.Ding, C.Liao, H.Robinson, J.Li
compound source
Molecule: Acetylcholinesterase
Chain: A, B, C
Fragment: Catalytic Subunit, Unp Residues 162-714
Synonym: Ache
Ec: 3.1.1.7
Engineered: Yes
Organism_scientific: Anopheles Gambiae
Organism_common: African Malaria Mosquito
Organism_taxid: 7165
Gene: Ace, Ace1, Ache1, Agap001356
Expression_system: Komagataella Pastoris
Expression_system_common: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppicza
symmetry Space Group: C 2 2 21
R_factor 0.200 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.440 235.910 167.270 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.45 Å
ligand BMA, GOL, MAN, NA, NAG enzyme Hydrolase E.C.3.1.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • Biological Unit Coordinates (5ydi.pdb1.gz) 169 Kb
  • Biological Unit Coordinates (5ydi.pdb2.gz) 174 Kb
  • LPC: Ligand-Protein Contacts for 5YDI
  • CSU: Contacts of Structural Units for 5YDI
  • Structure Factors (627 Kb)
  • Retrieve 5YDI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YDI from S2C, [Save to disk]
  • View 5YDI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YDI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ydi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ydi_B] [5ydi_A] [5ydi_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YDI
  • Community annotation for 5YDI at PDBWiki (http://pdbwiki.org)

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