6JPA Membrane Protein date Mar 26, 2019
title Rabbit Cav1.1-Verapamil Complex
authors Y.Zhao, G.Huang, J.Wu, N.Yan
compound source
Molecule: Voltage-Dependent L-Type Calcium Channel Subunit
Chain: A
Synonym: Calcium Channel,L Type,Alpha-1 Polypeptide,Isoform Skeletal Muscle,Dihydropyridine Receptor Alpha-1s Subunit,D Voltage-Gated Calcium Channel Subunit Alpha Cav1.1;
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Voltage-Dependent Calcium Channel Gamma-1 Subunit
Chain: E
Synonym: Dihydropyridine-Sensitive L-Type,Skeletal Muscle C Channel Subunit Gamma;
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Voltage-Dependent L-Type Calcium Channel Subunit
Chain: B
Synonym: Cab1,Calcium Channel Voltage-Dependent Subunit Bet
Engineered: Yes
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Gene: Cacnb1, Cacnlb1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Voltage-Dependent L-Type Calcium Channel Subunit
Chain: C
Synonym: Cab1,Calcium Channel Voltage-Dependent Subunit Bet
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Voltage-Dependent Calcium Channel Subunit Alpha-2
Chain: F
Synonym: Voltage-Gated Calcium Channel Subunit Alpha-2delt
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.60 Å
ligand 3PE, 4YH, 9Z9, BMA, CA, ETA, NAG, PC1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


E


F


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (417 Kb) [Save to disk]
  • Biological Unit Coordinates (6jpa.pdb1.gz) 394 Kb
  • LPC: Ligand-Protein Contacts for 6JPA
  • CSU: Contacts of Structural Units for 6JPA
  • Retrieve 6JPA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6JPA from S2C, [Save to disk]
    • View 6JPA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6JPA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6jpa_F] [6jpa_C] [6jpa_E] [6jpa_B] [6jpa_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6JPA
  • Community annotation for 6JPA at PDBWiki (http://pdbwiki.org)

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