1BJ3 Collagen Binding Protein date Jul 02, 1998
title Crystal Structure Of Coagulation Factor Ix-Binding Protein ( From Venom Of Habu Snake With A Heterodimer Of C-Type Lecti
authors H.Mizuno, Z.Fujimoto, M.Koizumi, H.Kano, H.Atoda, T.Morita
compound source
Molecule: Protein (Coagulation Factor Ix-Binding Protein A)
Chain: A
Fragment: C-Type Lectin Crd Domain
Synonym: Ix-Bp
Other_details: Disulphide Dimer Between A Cys79 And B Cys75 Composed Of Homologous Subunits To The Carbohydrate Recogni Domain Of C-Type Lectin;
 Organism_scientific: Trimeresurus Flavoviridis
Organism_taxid: 88087
Secretion: Venom

Molecule: Protein (Coagulation Factor Ix-Binding Protein B)
Chain: B
Fragment: C-Type Lectin Crd Domain
Synonym: Ix-Bp
Other_details: Disulphide Dimer Between A Cys79 And B Cys75 Composed Of Homologous Subunits To The Carbohydrate Recogni Domain Of C-Type Lectin
Organism_scientific: Trimeresurus Flavoviridis
Organism_taxid: 88087
Secretion: Venom
symmetry Space Group: P 1 21 1
R_factor 0.182 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.569 56.794 39.616 90.00 95.80 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CA enzyme
related structures by homologous chain: 1IJK, 1IXX
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • toxin activity


    • Primary referenceCrystal structure of coagulation factor IX-binding protein from habu snake venom at 2.6 A: implication of central loop swapping based on deletion in the linker region., Mizuno H, Fujimoto Z, Koizumi M, Kano H, Atoda H, Morita T, J Mol Biol 1999 May 28;289(1):103-12. PMID:10339409
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (1bj3.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1BJ3
  • CSU: Contacts of Structural Units for 1BJ3
  • Likely Quarternary Molecular Structure file(s) for 1BJ3
  • Retrieve 1BJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BJ3 from S2C, [Save to disk]
    • View 1BJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BJ3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BJ3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bj3a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bj3b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bj3_A] [1bj3] [1bj3_B]
  • SWISS-PROT database: [Q7LZ71] [P23807]
  • Domain organization of [IXA_TRIFL] [IXXB_TRIFL] by SWISSPFAM
  • Domain found in 1BJ3: [CLECT ] by SMART
    • Other resources with information on 1BJ3
  • Community annotation for 1BJ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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