1D8V Antitumor Protein date Oct 26, 1999
title The Restrained And Minimized Average Nmr Structure Of Map30.
authors Y.X.Wang, N.Neamati, J.Jacob, I.Palmer, S.J.Stahl
compound source
Molecule: Anti-Hiv And Anti-Tumor Protein Map30
Chain: A
 Organism_scientific: Momordica Charantia
Organism_common: Balsam Pear
Organism_taxid: 3673
methodSolution NMR
related structures by homologous chain: 1CF5
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceSolution structure of anti-HIV-1 and anti-tumor protein MAP30: structural insights into its multiple functions., Wang YX, Neamati N, Jacob J, Palmer I, Stahl SJ, Kaufman JD, Huang PL, Huang PL, Winslow HE, Pommier Y, Wingfield PT, Lee-Huang S, Bax A, Torchia DA, Cell 1999 Nov 12;99(4):433-42. PMID:10571185
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (1d8v.pdb1.gz) 78 Kb
  • CSU: Contacts of Structural Units for 1D8V
  • Original NMR restraints for 1D8V from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1D8V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D8V from S2C, [Save to disk]
    • View 1D8V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D8V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D8V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d8va_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d8v_A] [1d8v]
  • SWISS-PROT database: [P24817]
  • Domain organization of [RIP3_MOMCH] by SWISSPFAM
    • Other resources with information on 1D8V
  • Community annotation for 1D8V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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