1DEV Signaling Protein date Nov 15, 1999
title Crystal Structure Of Smad2 Mh2 Domain Bound To The Smad-Bind Of Sara
authors Y.Shi, G.Wu
compound source
Molecule: Mad (Mothers Against Decapentaplegic, Drosophila) 2;
Chain: A, C
Fragment: Smad2 Mh2 Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet3 And Pgex
Other_details: This Sequence Occurs Naturally In Humans

Molecule: Smad Anchor For Receptor Activation
Chain: B, D
Fragment: Sara Smad2-Binding Domain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet3 And Pgex
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: P 31 2 1
R_factor 0.218 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
138.500 138.500 55.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
related structures by homologous chain: 1KHU, 1MJS, 1MK2
Primary referenceStructural basis of Smad2 recognition by the Smad anchor for receptor activation., Wu G, Chen YG, Ozdamar B, Gyuricza CA, Chong PA, Wrana JL, Massague J, Shi Y, Science 2000 Jan 7;287(5450):92-7. PMID:10615055
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (1dev.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (1dev.pdb2.gz) 38 Kb
  • CSU: Contacts of Structural Units for 1DEV
  • Likely Quarternary Molecular Structure file(s) for 1DEV
  • Retrieve 1DEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DEV from S2C, [Save to disk]
  • View 1DEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DEV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DEV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1deva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1devb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1devc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1devd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1dev from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dev] [1dev_B] [1dev_D] [1dev_C] [1dev_A]
  • SWISS-PROT database: [Q15796] [O95405]
  • Domain organization of [SMAD2_HUMAN] [ZFYV9_HUMAN] by SWISSPFAM
  • Domains found in 1DEV: [DWB] [SARA ] by SMART
  • Other resources with information on 1DEV
  • Community annotation for 1DEV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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