1E33 Hydrolase date Jun 06, 2000
title Crystal Structure Of An Arylsulfatase A Mutant P426l
authors R.Von Buelow, B.Schmidt, T.Dierks, K.Von Figura, I.Uson
compound source
Molecule: Arylsulfatase A
Chain: P
Synonym: Cerebroside-3-Sulfate-Sulfatase
Ec: 3.1.6.8
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Testis
Cellular_location: Lysosome
Plasmid: Pmpsveh
Gene: Arsa
symmetry Space Group: I 4 2 2
R_factor 0.185 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.400 131.400 192.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand DDZ, MG, NDG enzyme Hydrolase E.C.3.1.6.8 BRENDA
related structures by homologous chain: 1E1Z, 1E3C
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceDefective oligomerization of arylsulfatase a as a cause of its instability in lysosomes and metachromatic leukodystrophy., von Bulow R, Schmidt B, Dierks T, Schwabauer N, Schilling K, Weber E, Uson I, von Figura K, J Biol Chem. 2002 Mar 15;277(11):9455-61. Epub 2002 Jan 2. PMID:11777924
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (1e33.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 1E33
  • CSU: Contacts of Structural Units for 1E33
  • Likely Quarternary Molecular Structure file(s) for 1E33
  • Structure Factors (429 Kb)
  • Retrieve 1E33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E33 from S2C, [Save to disk]
  • Re-refined 1e33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E33
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1E33, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e33p_, region P [Jmol] [rasmolscript] [script source]
  • Fold representative 1e33 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e33_P] [1e33]
  • SWISS-PROT database: [P15289]
  • Domain organization of [ARSA_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1E33 with the sequences similar proteins can be viewed for 1E33's classification [ARSA_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ARSA_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1E33
  • Community annotation for 1E33 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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