1E96 Signaling Protein date Oct 10, 2000
title Structure Of The Racp67phox Complex
authors K.Lapouge, S.J.M.Smith, P.A.Walker, S.J.Gamblin, S.J.Smerdon, K.Rittinger
compound source
Molecule: Ras-Related C3 Botulinum Toxin Substrate 1
Chain: A
Synonym: Rac1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pgex-2t

Molecule: Neutrophil Cytosol Factor 2 (Ncf-2) Tpr Domain, Residues 1-203;
Chain: B
Fragment: Yes
Synonym: P67phox
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pgex-4t
symmetry Space Group: P 32 2 1
R_factor 0.244 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.220 83.220 138.530 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.4 Å
ligand GTP, MG enzyme
related structures by homologous chain: 1A4R, 1HH8, 1KZ7
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the TPR domain of p67phox in complex with Rac.GTP., Lapouge K, Smith SJ, Walker PA, Gamblin SJ, Smerdon SJ, Rittinger K, Mol Cell 2000 Oct;6(4):899-907. PMID:11090627
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1e96.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 1E96
  • CSU: Contacts of Structural Units for 1E96
  • Likely Quarternary Molecular Structure file(s) for 1E96
  • Retrieve 1E96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E96 from S2C, [Save to disk]
  • View 1E96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E96
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1E96, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e96a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1e96b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1e96 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e96_B] [1e96] [1e96_A]
  • SWISS-PROT database: [P19878] [P63000]
  • Domain organization of [NCF2_HUMAN] [RAC1_HUMAN] by SWISSPFAM
  • Domains found in 1E96: [RHO] [TPR ] by SMART
  • Alignments of the sequence of 1E96 with the sequences similar proteins can be viewed for 1E96's classification [NCF2_HUMAN] [RAC1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NCF2_HUMAN] [RAC1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1E96
  • Community annotation for 1E96 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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