1EVV CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION date
authors Jovine, L., Djordjevic, S., Rhodes, D.
compound source
symmetry
R_factor
R_Free 0.2630000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand 1MA, 2MG, 5MC, 5MU, 7MG, H2U, M2G, MG, OMC, OMG, PSU, SPM, YG enzyme
Primary referenceThe crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals., Jovine L, Djordjevic S, Rhodes D, J Mol Biol 2000 Aug 11;301(2):401-14. PMID:10926517
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1evv.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 1EVV
  • CSU: Contacts of Structural Units for 1EVV
  • Likely Quarternary Molecular Structure file(s) for 1EVV
  • Structure Factors (153 Kb)
  • Retrieve 1EVV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EVV from S2C, [Save to disk]
  • Re-refined 1evv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1EVV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1EVV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EVV, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1evv] [1evv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1EVV
  • Community annotation for 1EVV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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