1FDO	Oxidoreductase	date	Jan 27, 1997
title	Oxidized Form Of Formate Dehydrogenase H From E. Coli
authors	P.D.Sun, J.C.Boyington
compound		source
Molecule: Formate Dehydrogenase H Chain: A Synonym: Fdh-H Ec: 1.2.1.2 Engineered: Yes Other_details: Oxidized Form (Mo(Vi),Fe4s4(Ox)) Of Fdh-H		Organism_scientific: Escherichia Coli Organism_taxid: 562 Strain: Fm911 Gene: Fdhf Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pfm20 Other_details: Fdh-H Was Expressed Anaerobically
symmetry	Space Group: P 41 21 2	R_factor 0.192 R_Free 0.281
crystal cell	length a length b length c angle alpha angle beta angle gamma 146.600 146.600 81.100 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	6MO, MGD, SF4	enzyme	Oxidoreductase E.C.1.2.1.2 BRENDA
related structures	by homologous chain: 1AA6, 1FDI
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of formate dehydrogenase H: catalysis involving Mo, molybdopterin, selenocysteine, and an Fe4S4 cluster., Boyington JC, Gladyshev VN, Khangulov SV, Stadtman TC, Sun PD, Science. 1997 Feb 28;275(5304):1305-8. PMID:9036855

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk] Biological Unit Coordinates (1fdo.pdb1.gz) 114 Kb LPC: Ligand-Protein Contacts for 1FDO CSU: Contacts of Structural Units for 1FDO Likely Quarternary Molecular Structure file(s) for 1FDO Structure Factors (189 Kb) Retrieve 1FDO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FDO from S2C, [Save to disk] Re-refined 1fdo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1FDO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FDO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FDO, from MSDmotif at EBI Genome occurence of 1FDO's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fdo_2, region 1-564 [Jmol] [rasmolscript] [script source]     - Domain d1fdo_1, region 565-715 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fdo] [1fdo_A] SWISS-PROT database: [P07658] Belongs to the h(+) or na(+)-translocating nadh dehydrogenase (ndh) family according to TCDB. Domain organization of [FDHF_ECOLI] by SWISSPFAM Domain found in 1FDO: [Molybdop_Fe4S4 ] by SMART

Other resources with information on 1FDO

Community annotation for 1FDO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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