1J4G crystal structure analysis of the trichosanthin delta C7 date
authors Ding, Y., Too, H.M., Wang, Z.L., Liu, Y.W., Dong, Y.C., Shaw, P.C., Rao, Z.H.
compound source
symmetry
R_factor
R_Free 0.2350000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand CA enzyme
related structures by homologous chain: 1AHC, 1CF5, 1NLI
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • toxin activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (1j4g.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (1j4g.pdb2.gz) 43 Kb
  • Biological Unit Coordinates (1j4g.pdb3.gz) 43 Kb
  • Biological Unit Coordinates (1j4g.pdb4.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1J4G
  • CSU: Contacts of Structural Units for 1J4G
  • Likely Quarternary Molecular Structure file(s) for 1J4G
  • Retrieve 1J4G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J4G from S2C, [Save to disk]
    • View 1J4G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1J4G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J4G, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j4ga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j4gb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1j4gc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1j4gd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j4g_A] [1j4g_B] [1j4g] [1j4g_C] [1j4g_D]
  • SWISS-PROT database: [P09989]
  • Domain organization of [RIPT_TRIKI] by SWISSPFAM
    • Other resources with information on 1J4G
  • Community annotation for 1J4G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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