1JGO Ribosome date Jun 26, 2001
title The Path Of Messenger Rna Through The Ribosome. This File, 1 Contains The 30s Ribosome Subunit, Three Trna, And Mrna Mol 50s Ribosome Subunit Is In The File 1giy
authors G.Z.Yusupova, M.M.Yusupov, J.H.D.Cate, H.F.Noller
compound source
Molecule: 30s 16s Ribosomal Rna
Chain: A
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Trna(Phe)
Chain: B, C
Engineered: Yes
Other_details: A-Site Trna Chain B, P-Site Trna Chain C

Synthetic: Yes
Other_details: Sequence Naturally Occurs In Saccharomyces Cerevisiae;

Molecule: Trna(Phe)
Chain: D
Engineered: Yes
Other_details: E-Site Trna

Synthetic: Yes
Other_details: Sequence Naturally Occurs In Saccharomyces Cerevisiae;

Molecule: Messenger Rna Mk27
Chain: 1
Engineered: Yes
Other_details: 27 Nt Long Mrna Fragment. The Actual Sequenc Ggcaaggagguaaaa Augaaa Aaaaaa Modeled As Ggcaaggagguaaaa Uu Aaaaaa;

Synthetic: Yes

Molecule: 30s Ribosomal Protein S2
Chain: E

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S3
Chain: F

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S4
Chain: G

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S5
Chain: H

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S6
Chain: I

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S7
Chain: J

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S8
Chain: K

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S9
Chain: L

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S10
Chain: M

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S11
Chain: N

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S12
Chain: O

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S13
Chain: P

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S14
Chain: Q

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S15
Chain: R

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S16
Chain: S

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S17
Chain: T

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S18
Chain: U

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S19
Chain: V

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S20
Chain: W

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein Thx
Chain: X

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
symmetry Space Group: I 4 2 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
507.200 507.200 803.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 5.60 Å
ligand 1MA, 2MG, 4SU, 5MC, 5MU, 7MG, H2U, M2G, OMC, OMG, PSU, YG enzyme
Gene
Ontology
ChainFunctionProcessComponent
E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


W


X


Primary referenceThe path of messenger RNA through the ribosome., Yusupova GZ, Yusupov MM, Cate JH, Noller HF, Cell 2001 Jul 27;106(2):233-41. PMID:11511350
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (1jgo.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 1JGO
  • CSU: Contacts of Structural Units for 1JGO
  • Likely Quarternary Molecular Structure file(s) for 1JGO
  • Retrieve 1JGO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JGO from S2C, [Save to disk]
  • View 1JGO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JGO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JGO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jgoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jgoe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1jgof_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1jgog_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1jgoh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1jgoi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1jgoj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1jgok_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1jgol_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1jgom_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1jgon_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1jgoo_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1jgop_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1jgoq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1jgor_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1jgos_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1jgot_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1jgou_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1jgov_, region V [Jmol] [rasmolscript] [script source]
        - Domain d1jgow_, region W [Jmol] [rasmolscript] [script source]
        - Domain d1jgox_, region X [Jmol] [rasmolscript] [script source]
  • Fold representative 1jgo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jgo] [1jgo_B] [1jgo_H] [1jgo_K] [1jgo_T] [1jgo_Q] [1jgo_D] [1jgo_U] [1jgo_N] [1jgo_W] [1jgo_A] [1jgo_I] [1jgo_F] [1jgo_S] [1jgo_E] [1jgo_1] [1jgo_C] [1jgo_X] [1jgo_J] [1jgo_O] [1jgo_R] [1jgo_V] [1jgo_L] [1jgo_P] [1jgo_M] [1jgo_G]
  • SWISS-PROT database: [Q5SHN7] [P80376] [Q5SHN3] [P80377] [Q5SHQ1] [Q5SJ76] [Q5SJH3] [Q5SHP7] [Q5SLQ0] [Q5SHP2] [P80380] [P80371] [P80373] [Q5SHQ5] [Q5SLP8] [P17291] [Q5SHQ2] [P80374] [Q5SIH3]
  • Domain organization of [RS10_THET8] [RS11_THET8] [RS12_THET8] [RS13_THET8] [RS14Z_THET8] [RS15_THET8] [RS16_THET8] [RS17_THET8] [RS18_THET8] [RS19_THET8] [RS20_THET8] [RS2_THET8] [RS4_THET8] [RS5_THET8] [RS6_THET8] [RS7_THET8] [RS8_THET8] [RS9_THET8] [RSHX_THET8] by SWISSPFAM
  • Domains found in 1JGO: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 1JGO
  • Community annotation for 1JGO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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