1SZ1 Transferase Rna date Apr 02, 2004
title Mechanism Of Cca-Adding Enzymes Specificity Revealed By Crys Structures Of Ternary Complexes
authors Y.Xiong, T.A.Steitz
compound source
Molecule: T-Rna (76-Mer)
Chain: E, F
Engineered: Yes
Synthetic: Yes

Molecule: Trna Nucleotidyltransferase
Chain: A, B
Synonym: Trna Adenylyltransferase, Trna Cca-Pyrophosphoryla Adding Enzyme;
Ec: 2.7.7.25
Engineered: Yes

Organism_scientific: Archaeoglobus Fulgidus
Organism_taxid: 2234
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 3 2 1
R_factor 0.360 R_Free 0.380
crystal
cell
length a length b length c angle alpha angle beta angle gamma
218.403 218.403 170.263 90.00 90.00 120.00
method X-Ray Diffractionresolution 6.21 Å
ligand 1MA, 2MG, 5MC, 5MU, 7MG, H2U, M2G, OMC, OMG, PSU, YG enzyme Transferase E.C.2.7.7.25 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMechanism of transfer RNA maturation by CCA-adding enzyme without using an oligonucleotide template., Xiong Y, Steitz TA, Nature 2004 Aug 5;430(7000):640-5. PMID:15295590
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (254 Kb) [Save to disk]
  • Biological Unit Coordinates (1sz1.pdb1.gz) 244 Kb
  • LPC: Ligand-Protein Contacts for 1SZ1
  • CSU: Contacts of Structural Units for 1SZ1
  • Likely Quarternary Molecular Structure file(s) for 1SZ1
  • Structure Factors (105 Kb)
  • Retrieve 1SZ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SZ1 from S2C, [Save to disk]
  • Re-refined 1sz1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SZ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SZ1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SZ1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sz1a2, region A:1-142 [Jmol] [rasmolscript] [script source]
        - Domain d1sz1a1, region A:143-257 [Jmol] [rasmolscript] [script source]
        - Domain d1sz1a3, region A:258-437 [Jmol] [rasmolscript] [script source]
        - Domain d1sz1b2, region B:1-142 [Jmol] [rasmolscript] [script source]
        - Domain d1sz1b1, region B:143-257 [Jmol] [rasmolscript] [script source]
        - Domain d1sz1b3, region B:258-437 [Jmol] [rasmolscript] [script source]
  • Fold representative 1sz1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sz1_A] [1sz1_E] [1sz1_B] [1sz1_F] [1sz1]
  • SWISS-PROT database: [O28126]
  • Domain organization of [CCA_ARCFU] by SWISSPFAM
  • Other resources with information on 1SZ1
  • Community annotation for 1SZ1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science