1YJN Crystal Structure Of Clindamycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui date
authors Tu, D., Blaha, G., Moore, P.B., Steitz, T.A.
compound source
symmetry
R_factor
R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand 1MA, CD, CL, CLY, K, MG, NA, OMG, OMU, PSU, UR3 enzyme
related structures by homologous chain: 1NJI, 1Q82, 1YJ9
Gene
Ontology
ChainFunctionProcessComponent
1


2


3


A


B


C


D


E


F
  • ribonuclease P activity


  • G


    H


    I


    J


    K


    L


    M


    N


    O


    P


    Q


    R


    S


    T


    U


    V


    W


    X


    Y


    Z


    Primary referenceStructures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance., Tu D, Blaha G, Moore PB, Steitz TA, Cell. 2005 Apr 22;121(2):257-70. PMID:15851032
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2009 Kb) [Save to disk]
  • Biological Unit Coordinates (1yjn.pdb1.gz) 1940 Kb
  • LPC: Ligand-Protein Contacts for 1YJN
  • CSU: Contacts of Structural Units for 1YJN
  • Likely Quarternary Molecular Structure file(s) for 1YJN
  • Structure Factors (9482 Kb)
  • Retrieve 1YJN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YJN from S2C, [Save to disk]
  • Re-refined 1yjn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YJN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YJN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YJN, from MSDmotif at EBI
  • Fold representative 1yjn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yjn_Z] [1yjn_D] [1yjn_S] [1yjn_E] [1yjn_N] [1yjn_0] [1yjn_I] [1yjn_M] [1yjn_V] [1yjn_P] [1yjn_H] [1yjn_A] [1yjn_1] [1yjn_C] [1yjn_Y] [1yjn_T] [1yjn_F] [1yjn] [1yjn_W] [1yjn_K] [1yjn_B] [1yjn_L] [1yjn_G] [1yjn_3] [1yjn_R] [1yjn_Q] [1yjn_U] [1yjn_2] [1yjn_J] [1yjn_O] [1yjn_9] [1yjn_X]
  • SWISS-PROT database: [P60617] [P14122] [P29198] [P22450] [P60618] [P12737] [P12733] [P14123] [P14119] [P12734] [P10970] [P12732] [P14116] [P10972] [P10971] [P20276] [P14121] [P18138] [P12736] [P60619] [P32410] [P22452] [P20279] [P32411] [P12735] [P14124] [P14135] [P12743] [P15825]
  • Domain organization of [RL10_HALMA] [RL11_HALMA] [RL13_HALMA] [RL14_HALMA] [RL15E_HALMA] [RL15_HALMA] [RL18E_HALMA] [RL18_HALMA] [RL19_HALMA] [RL21_HALMA] [RL22_HALMA] [RL23_HALMA] [RL24E_HALMA] [RL24_HALMA] [RL29_HALMA] [RL2_HALMA] [RL30_HALMA] [RL31_HALMA] [RL32_HALMA] [RL37A_HALMA] [RL37_HALMA] [RL39_HALMA] [RL3_HALMA] [RL44_HALMA] [RL4_HALMA] [RL5_HALMA] [RL6_HALMA] [RL7A_HALMA] [RLA0_HALMA] by SWISSPFAM
  • Domains found in 1YJN: [HhH1] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [TRASH ] by SMART
  • Other resources with information on 1YJN
  • Community annotation for 1YJN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science