1BM6	Metalloprotease	date	Jul 29, 1998
title	Solution Structure Of The Catalytic Domain Of Human Stromely Complexed To A Potent Non-Peptidic Inhibitor, Nmr, 20 Struc
authors	Y.Li, X.Zhang, R.Melton, V.Ganu, N.C.Gonnella
compound		source
Molecule: Stromelysin-1 Chain: A Synonym: Mmp-3 Ec: 3.4.24.17 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_plasmid: Pro-Sfstr Expression_system_gene: Human Stromelysin-1
method	Solution NMR
ligand	3MP, CA, HAV, MSB, ZN	enzyme	Hydrolase E.C.3.4.24.17 BRENDA
related structures	by homologous chain: 2AYK, 2SRT
Gene Ontology	Chain Function Process Component A
Primary reference	Solution structure of the catalytic domain of human stromelysin-1 complexed to a potent, nonpeptidic inhibitor., Li YC, Zhang X, Melton R, Ganu V, Gonnella NC, Biochemistry 1998 Oct 6;37(40):14048-56. PMID:9760240

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (913 Kb) [Save to disk] Biological Unit Coordinates (1bm6.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 1BM6 CSU: Contacts of Structural Units for 1BM6 Original NMR restraints for 1BM6 from PDB Retrieve 1BM6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BM6 from S2C, [Save to disk]

View 1BM6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BM6

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BM6, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1bm6__, region [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bm6] [1bm6_A] SWISS-PROT database: [P08254] Domain organization of [MMP3_HUMAN] by SWISSPFAM Domain found in 1BM6: [ZnMc ] by SMART

Other resources with information on 1BM6

Community annotation for 1BM6 at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1BM6 from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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