2DGZ Dna Binding Protein date Mar 16, 2006
title Solution Structure Of The Helicase And Rnase D C-Terminal Domain In Werner Syndrome Atp-Dependent Helicase
authors C.Abe, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Werner Syndrome Protein Variant
Chain: A
Fragment: Helicase And Rnase D C-Terminal Domain
Synonym: Werner Syndrome Atp-Dependent Helicase
Ec: 3.6.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wrn
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P051212-13
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.6.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (573 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2DGZ
  • Retrieve 2DGZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DGZ from S2C, [Save to disk]
  • View 2DGZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2DGZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2DGZ, from MSDmotif at EBI
  • Fold representative 2dgz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dgz_A] [2dgz]
  • SWISS-PROT database: [Q14191]
  • Domain organization of [WRN_HUMAN] by SWISSPFAM
  • Domain found in 2DGZ: [HRDC ] by SMART
  • Alignments of the sequence of 2DGZ with the sequences similar proteins can be viewed for 2DGZ's classification [WRN_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [WRN_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2DGZ
  • Community annotation for 2DGZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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