2OM7 Ribosome date Jan 21, 2007
title Structural Basis For Interaction Of The Ribosome With The Sw Regions Of Gtp-Bound Elongation Factors
authors S.R.Connell, D.N.Wilson, M.Rost, M.Schueler, J.Giesebrecht, M.Dab T.Mielke, P.Fucini, C.M.T.Spahn
compound source
Molecule: Fragment Of 16s Rrna (H14)
Chain: A
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Other_details: 16s Rrna

Molecule: Fragment Of 16s Rrna (H15)
Chain: B

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Other_details: 16s Rrna

Molecule: Fragment Of 16s Rrna (H44)
Chain: C

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Other_details: 16s Rrna

Molecule: 16s Ribosomal Rna (H5)
Chain: D

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Other_details: 16s Rrna

Molecule: Fragment Of23s Rrna (H95)
Chain: F

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Other_details: 23s Rrna

Molecule: Fragment Of23s Rrna (H68)
Chain: G

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Other_details: 23s Rrna

Molecule: Fragment Of23s Rrna (H89)
Chain: H

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Other_details: 23s Rrna

Molecule: Fragment Of23s Rrna (H42-44)
Chain: I

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Other_details: 23s Rrna

Molecule: Fragment Of23s Rrna (H76)
Chain: J

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Other_details: 23s Rrna

Molecule: Pe-Trna
Chain: M

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Other_details: Trna

Molecule: 30s Ribosomal Protein S12
Chain: E

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Other_details: Small Ribosomal Subunit Protein S12

Molecule: 50s Ribosomal Protein L1
Chain: K

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Other_details: Large Ribosomal Subunit Protein L1

Molecule: Elongation Factor G
Chain: L
Synonym: Ef-G
Engineered: Yes

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Gene: Fusa, Fus
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: 30s Ribosomal Protein S2
Chain: N

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Other_details: Small Ribosomal Subunit Protein S2
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.30 Å
ligand 4SU, 5MC, 5MU, H2U, PSU enzyme
Gene
Ontology
ChainFunctionProcessComponent
E


K


L


N


Primary referenceStructural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors., Connell SR, Takemoto C, Wilson DN, Wang H, Murayama K, Terada T, Shirouzu M, Rost M, Schuler M, Giesebrecht J, Dabrowski M, Mielke T, Fucini P, Yokoyama S, Spahn CM, Mol Cell. 2007 Mar 9;25(5):751-64. PMID:17349960
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (331 Kb) [Save to disk]
  • Biological Unit Coordinates (2om7.pdb1.gz) 324 Kb
  • LPC: Ligand-Protein Contacts for 2OM7
  • CSU: Contacts of Structural Units for 2OM7
  • Likely Quarternary Molecular Structure file(s) for 2OM7
  • Retrieve 2OM7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OM7 from S2C, [Save to disk]
  • View 2OM7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OM7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OM7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2om7_K] [2om7_M] [2om7_C] [2om7_N] [2om7_E] [2om7_G] [2om7_B] [2om7_H] [2om7] [2om7_I] [2om7_L] [2om7_F] [2om7_J] [2om7_A] [2om7_D]
  • SWISS-PROT database: [P13551] [Q5SLP7] [P17293] [P80371]
  • Domain organization of [EFG_THETH] [RL1_THET8] [RS12_THETH] [RS2_THET8] by SWISSPFAM
  • Domains found in 2OM7: [EFG_C] [EFG_IV ] by SMART
  • Other resources with information on 2OM7
  • Community annotation for 2OM7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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