2V5P	Receptor Glycoprotein	date	Jul 06, 2007
title	Complex Structure Of Human Igf2r Domains 11-13 Bound To Igf-
authors	J.Brown, C.Delaine, O.J.Zaccheo, C.Siebold, R.J.Gilbert, G.Van Bo A.Denley, J.C.Wallace, A.B.Hassan, B.E.Forbes, E.Y.Jones
compound		source
Molecule: Cation-Independent Mannose-6-Phosphate Receptor Chain: A, B Fragment: Domains 11-13, Residues 1508-1992 Synonym: Insulin-Like Growth Factor II Receptor, Ci Man-6-P Ci-Mpr, M6pr, Insulin-Like Growth Factor 2 Receptor, Igf-II M6pigf2 Receptor, M6pigf2r, 300 Kda Mannose 6-Phosphate R Mpr 300, Mpr300, Cd222 Antigen; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Atcc: 95661 Organ: Placenta Expression_system: Cricetulus Griseus Expression_system_taxid: 10029 Expression_system_variant: Lecr 3.2.8.1 Expression_system_cell_line: Cho Expression_system_plasmid: Pee14
Molecule: Insulin-Like Growth Factor II Chain: C, D Synonym: Igf-II, Somatomedin A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm101 Expression_system_plasmid: Pgem-Teasy
symmetry	Space Group: C 1 2 1	R_factor 0.291 R_Free 0.327
crystal cell	length a length b length c angle alpha angle beta angle gamma 165.979 117.312 116.668 90.00 123.41 90.00
method	X-Ray Diffraction	resolution	4.10 Å
ligand	BMA, NAG	enzyme
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Structure and functional analysis of the IGF-II/IGF2R interaction., Brown J, Delaine C, Zaccheo OJ, Siebold C, Gilbert RJ, van Boxel G, Denley A, Wallace JC, Hassan AB, Forbes BE, Jones EY, EMBO J. 2007 Nov 29;. PMID:18046459

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (331 Kb) [Save to disk] Biological Unit Coordinates (2v5p.pdb1.gz) 163 Kb Biological Unit Coordinates (2v5p.pdb2.gz) 164 Kb LPC: Ligand-Protein Contacts for 2V5P CSU: Contacts of Structural Units for 2V5P Likely Quarternary Molecular Structure file(s) for 2V5P Structure Factors (125 Kb) Retrieve 2V5P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2V5P from S2C, [Save to disk] Re-refined 2v5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2V5P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2V5P

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2V5P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2v5p_B] [2v5p_D] [2v5p] [2v5p_C] [2v5p_A] SWISS-PROT database: [P01344] [P11717] Belongs to the mannose 6-phosphate receptor (m6pr) family according to TCDB. Domain organization of [IGF2_HUMAN] [MPRI_HUMAN] by SWISSPFAM Domains found in 2V5P: [CIMR] [FN2] [IlGF ] by SMART

Other resources with information on 2V5P

Community annotation for 2V5P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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