2XNF Transcription date Aug 02, 2010
title The Mediator Med25 Activator Interaction Domain: Structure A Cooperative Binding Of Vp16 Subdomains
authors E.Vojnic, A.Mourao, M.Seizl, B.Simon, L.Wenzeck, L.Lariviere, S.Ba M.Meisterernst, M.Sattler, P.Cramer
compound source
Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: A
Fragment: Med25 Acid Domain, Residues 394-543
Synonym: Mediator Complex Subunit 25, Activator-Recruited C 92 Kda Component, Arc92, Activator Interaction Domain-Cont Protein 1, P78, Med25;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Primary referenceStructure and VP16 binding of the Mediator Med25 activator interaction domain., Vojnic E, Mourao A, Seizl M, Simon B, Wenzeck L, Lariviere L, Baumli S, Baumgart K, Meisterernst M, Sattler M, Cramer P, Nat Struct Mol Biol. 2011 Apr;18(4):404-9. Epub 2011 Mar 6. PMID:21378965
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (433 Kb) [Save to disk]
  • Biological Unit Coordinates (2xnf.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 2XNF
  • Original NMR restraints for 2XNF from PDB
  • Retrieve 2XNF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XNF from S2C, [Save to disk]
  • View 2XNF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XNF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XNF, from MSDmotif at EBI
  • Fold representative 2xnf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xnf] [2xnf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XNF
  • Community annotation for 2XNF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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