2YEM Crystal Structure of the Second Bromodomain of Human Brd4 with the inhibitor GW841819X date
authors Chung, C.W.
compound source
symmetry
R_factor
R_Free 0.22852
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand WSH BindingDB enzyme
Primary referenceDiscovery and Characterization of Small Molecule Inhibitors of the BET Family Bromodomains., Chung CW, Coste H, White JH, Mirguet O, Wilde J, Gosmini RL, Delves C, Magny SM, Woodward R, Hughes SA, Boursier EV, Flynn H, Bouillot AM, Bamborough P, Brusq JM, Gellibert FJ, Jones EJ, Riou AM, Homes P, Martin SL, Uings IJ, Toum J, Clement CA, Boullay AB, Grimley RL, Blandel FM, Prinjha RK, Lee K, Kirilovsky J, Nicodeme E, J Med Chem. 2011 Jun 9;54(11):3827-3838. Epub 2011 May 13. PMID:21568322
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (2yem.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (2yem.pdb2.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 2YEM
  • CSU: Contacts of Structural Units for 2YEM
  • Structure Factors (947 Kb)
  • Retrieve 2YEM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YEM from S2C, [Save to disk]
  • Re-refined 2yem structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YEM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YEM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YEM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yem_B] [2yem] [2yem_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2YEM: [BROMO ] by SMART
    • Other resources with information on 2YEM
  • Community annotation for 2YEM at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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