3AGV date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, CA, CFZ, FUL, GAL, GLA, MAN, NAG, NDG, UFT enzyme
Primary referenceConformational plasticity of RNA for target recognition as revealed by the 2.15 A crystal structure of a human IgG-aptamer complex., Nomura Y, Sugiyama S, Sakamoto T, Miyakawa S, Adachi H, Takano K, Murakami S, Inoue T, Mori Y, Nakamura Y, Matsumura H, Nucleic Acids Res. 2010 Jul 30. PMID:20675355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (3agv.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 3AGV
  • CSU: Contacts of Structural Units for 3AGV
  • Structure Factors (865 Kb)
  • Retrieve 3AGV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AGV from S2C, [Save to disk]
  • Re-refined 3agv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3AGV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3agv] [3agv_A] [3agv_B] [3agv_S] [3agv_U]
  • SWISS-PROT database:
  • Domains found in 3AGV: [IG_like] [IGc1 ] by SMART

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