3FDM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ACE, B3L, EDO, NH2, XCP, XPC enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, C, A


Primary referenceHigh-Resolution Structural Characterization of a Helical alpha/beta-Peptide Foldamer Bound to the Anti-Apoptotic Protein Bcl-x(L)., Lee EF, Sadowsky JD, Smith BJ, Czabotar PE, Peterson-Kaufman KJ, Colman PM, Gellman SH, Fairlie WD, Angew Chem Int Ed Engl. 2009 Feb 19. PMID:19229915
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (3fdm.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (3fdm.pdb2.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 3FDM
  • CSU: Contacts of Structural Units for 3FDM
  • Likely Quarternary Molecular Structure file(s) for 3FDM
  • Structure Factors (399 Kb)
  • Retrieve 3FDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FDM from S2C, [Save to disk]
  • Re-refined 3fdm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fdm] [3fdm_A] [3fdm_B] [3fdm_C] [3fdm_D] [3fdm_E] [3fdm_F]
  • SWISS-PROT database: [Q07817]
  • Belongs to the bcl-2 (bcl-2) family according to TCDB.
  • Domains found in 3FDM: [BCL] [BH4 ] by SMART

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