3G0Q Hydrolase Dna date Jan 28, 2009
title Crystal Structure Of Muty Bound To Its Inhibitor Dna
authors S.Lee, G.L.Verdine
compound source
Molecule: Ag-Specific Adenine Glycosylase
Chain: A
Ec: 3.2.2.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacillus Stearothermophilus
Organism_taxid: 1422
Gene: Muty
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28

Molecule: 5'-D(Apapgpapcp(8og)Pgpgpgpapc)-3'
Chain: B
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Gptpcpcpcpapgptpcptpt)-3'
Chain: C
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.246 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.700 85.900 142.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 8OG, A5L, CA, SF4 enzyme Hydrolase E.C.3.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAtomic substitution reveals the structural basis for substrate adenine recognition and removal by adenine DNA glycosylase., Lee S, Verdine GL, Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18497-502. Epub 2009 Oct 19. PMID:19841264
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (3g0q.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 3G0Q
  • CSU: Contacts of Structural Units for 3G0Q
  • Structure Factors (244 Kb)
  • Retrieve 3G0Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G0Q from S2C, [Save to disk]
  • Re-refined 3g0q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G0Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G0Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3G0Q, from MSDmotif at EBI
  • Fold representative 3g0q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g0q_A] [3g0q_B] [3g0q_C] [3g0q]
  • SWISS-PROT database: [P83847]
  • Domain organization of [P83847_BACST] by SWISSPFAM
  • Domains found in 3G0Q: [ENDO3c] [FES ] by SMART
  • Other resources with information on 3G0Q
  • Community annotation for 3G0Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science