3G0Q Hydrolase Dna date Jan 28, 2009
title Crystal Structure Of Muty Bound To Its Inhibitor Dna
authors S.Lee, G.L.Verdine
compound source
Molecule: Ag-Specific Adenine Glycosylase
Chain: A
Ec: 3.2.2.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacillus Stearothermophilus
Organism_taxid: 1422
Gene: Muty
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28

Molecule: 5'-D(Apapgpapcp(8og)Pgpgpgpapc)-3'
Chain: B
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Gptpcpcpcpapgptpcptpt)-3'
Chain: C
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.246 R_Free 0.277
length a length b length c angle alpha angle beta angle gamma
37.700 85.900 142.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 8OG, A5L, CA, SF4 enzyme Hydrolase E.C.3.2.2 BRENDA

Primary referenceAtomic substitution reveals the structural basis for substrate adenine recognition and removal by adenine DNA glycosylase., Lee S, Verdine GL, Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18497-502. Epub 2009 Oct 19. PMID:19841264
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (3g0q.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 3G0Q
  • CSU: Contacts of Structural Units for 3G0Q
  • Structure Factors (244 Kb)
  • Retrieve 3G0Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G0Q from S2C, [Save to disk]
  • Re-refined 3g0q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G0Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G0Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3G0Q, from MSDmotif at EBI
  • Fold representative 3g0q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g0q_A] [3g0q_B] [3g0q_C] [3g0q]
  • SWISS-PROT database: [P83847]
  • Domain organization of [P83847_BACST] by SWISSPFAM
  • Domains found in 3G0Q: [ENDO3c] [FES ] by SMART
  • Other resources with information on 3G0Q
  • Community annotation for 3G0Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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