3OGR Hydrolase date Aug 17, 2010
title Complex Structure Of Beta-Galactosidase From Trichoderma Ree Galactose
authors M.Maksimainen, J.Rouvinen
compound source
Molecule: Beta-Galactosidase
Chain: A
Ec: 3.2.1.23
Organism_scientific: Trichoderma Reesei
Organism_common: Hypocrea Jecorina
Organism_taxid: 51453
symmetry Space Group: P 1
R_factor 0.128 R_Free 0.168
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.430 69.280 81.500 109.03 97.34 114.38
method X-Ray Diffractionresolution 1.50 Å
ligand BMA, GAL, GLC, MAN, NAG enzyme Hydrolase E.C.3.2.1.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of Trichoderma reesei beta-galactosidase reveal conformational changes in the active site., Maksimainen M, Hakulinen N, Kallio JM, Timoharju T, Turunen O, Rouvinen J, J Struct Biol. 2011 Apr;174(1):156-63. Epub 2010 Dec 3. PMID:21130883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (3ogr.pdb1.gz) 175 Kb
  • LPC: Ligand-Protein Contacts for 3OGR
  • CSU: Contacts of Structural Units for 3OGR
  • Structure Factors (1321 Kb)
  • Retrieve 3OGR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OGR from S2C, [Save to disk]
  • Re-refined 3ogr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OGR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OGR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OGR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ogr] [3ogr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OGR: [BetaGal_dom2 ] by SMART
  • Other resources with information on 3OGR
  • Community annotation for 3OGR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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