OCA Atlas for 3PKI

3PKI

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

AR6, SO4, UNX, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, D, A, E, F, C	NAD-dependent histone deacet...

Primary reference

Structure and biochemical functions of SIRT6., Pan PW, Feldman JL, Devries MK, Dong A, Edwards AM, Denu JM, J Biol Chem. 2011 Apr 22;286(16):14575-87. Epub 2011 Mar 1. PMID:21362626

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (293 Kb) [Save to disk]

Biological Unit Coordinates (3pki.pdb1.gz) 53 Kb

Biological Unit Coordinates (3pki.pdb2.gz) 52 Kb

Biological Unit Coordinates (3pki.pdb3.gz) 52 Kb

Biological Unit Coordinates (3pki.pdb4.gz) 52 Kb

Biological Unit Coordinates (3pki.pdb5.gz) 51 Kb

Biological Unit Coordinates (3pki.pdb6.gz) 51 Kb

Biological Unit Coordinates (3pki.pdb7.gz) 146 Kb

Biological Unit Coordinates (3pki.pdb8.gz) 143 Kb

LPC: Ligand-Protein Contacts for 3PKI

CSU: Contacts of Structural Units for 3PKI

Structure Factors (2250 Kb)

Retrieve 3PKI in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3PKI from S2C, [Save to disk]

Re-refined 3pki structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PKI in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3pki] [3pki_A] [3pki_B] [3pki_C] [3pki_D] [3pki_E] [3pki_F]

SWISS-PROT database:

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