3PZD	Motor Protein Apoptosis	date	Dec 14, 2010
title	Structure Of The Myosin X Myth4-Fermdcc Complex
authors	Z.Wei, J.Yan, L.Pan, M.Zhang
compound		source
Molecule: Myosin-X Chain: A Fragment: Myth4-Ferm Tandem Synonym: Unconventional Myosin-10 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kiaa0799, Myo10 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet32a
Molecule: Netrin Receptor Dcc Chain: B Fragment: P3 Motif Synonym: Tumor Suppressor Protein Dcc Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Dcc Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.203 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 85.167 49.528 92.814 90.00 112.58 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	Cargo recognition mechanism of myosin X revealed by the structure of its tail MyTH4-FERM tandem in complex with the DCC P3 domain., Wei Z, Yan J, Lu Q, Pan L, Zhang M, Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3572-7. Epub 2011 Feb 14. PMID:21321230

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk] Biological Unit Coordinates (3pzd.pdb1.gz) 144 Kb LPC: Ligand-Protein Contacts for 3PZD CSU: Contacts of Structural Units for 3PZD Structure Factors (1222 Kb) Retrieve 3PZD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PZD from S2C, [Save to disk] Re-refined 3pzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PZD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PZD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PZD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3pzd_B] [3pzd_A] [3pzd] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3PZD: [B41] [MyTH4 ] by SMART

Other resources with information on 3PZD

Community annotation for 3PZD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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