3S8W Signaling Protein Receptor date May 31, 2011
title D2 Domain Of Human Ifnar2
authors C.Thomas, K.C.Garcia
compound source
Molecule: Interferon Alphabeta Receptor 2
Chain: A, B, C
Fragment: Unp Residues 131-232
Synonym: Ifn-R-2, Ifn-Alpha Binding Protein, Ifn-Alphabeta 2, Interferon Alpha Binding Protein, Type I Interferon Rece
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifnar2, Ifnabr, Ifnarb
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 65 2 2
R_factor 0.218 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.660 82.660 225.330 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand CL, MSE enzyme
note 3S8W is a representative structure
Primary referenceStructural Linkage between Ligand Discrimination and Receptor Activation by Type I Interferons., Thomas C, Moraga I, Levin D, Krutzik PO, Podoplelova Y, Trejo A, Lee C, Yarden G, Vleck SE, Glenn JS, Nolan GP, Piehler J, Schreiber G, Garcia KC, Cell. 2011 Aug 19;146(4):621-32. PMID:21854986
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3s8w.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (3s8w.pdb2.gz) 28 Kb
  • Biological Unit Coordinates (3s8w.pdb3.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 3S8W
  • CSU: Contacts of Structural Units for 3S8W
  • Structure Factors (175 Kb)
  • Retrieve 3S8W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S8W from S2C, [Save to disk]
  • Re-refined 3s8w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S8W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S8W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3S8W, from MSDmotif at EBI
  • Fold representative 3s8w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s8w_B] [3s8w] [3s8w_C] [3s8w_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3S8W
  • Community annotation for 3S8W at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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