3VEU Hydrolase Hydrolase Inhibitor date Jan 09, 2012
title Crystal Structure Of Human Beta Secretase In Complex With Nv
authors J.M.Rondeau, E.Bourgier
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Unp Residues 48-447
Synonym: Aspartyl Protease 2, Asp2, Asp 2, Beta-Site Amyloi Precursor Protein Cleaving Enzyme 1, Beta-Site App Cleaving Memapsin-2, Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.486 73.643 103.917 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.52 Å
ligand 0GO BindingDB enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of cyclic sulfone hydroxyethylamines as potent and selective beta-site APP-cleaving enzyme 1 (BACE1) inhibitors: structure-based design and in vivo reduction of amyloid beta-peptides., Rueeger H, Lueoend R, Rogel O, Rondeau JM, Mobitz H, Machauer R, Jacobson L, Staufenbiel M, Desrayaud S, Neumann U, J Med Chem. 2012 Apr 12;55(7):3364-86. Epub 2012 Mar 21. PMID:22380629
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (3veu.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 3VEU
  • CSU: Contacts of Structural Units for 3VEU
  • Structure Factors (482 Kb)
  • Retrieve 3VEU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VEU from S2C, [Save to disk]
  • Re-refined 3veu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VEU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VEU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VEU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3veu] [3veu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VEU
  • Community annotation for 3VEU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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