3VFQ	Transferase	date	Jan 10, 2012
title	Human Parp14 (Artd8, Bal2) - Macro Domains 1 And 2 In Comple Adenosine-5-Diphosphoribose
authors	T.Karlberg, A.G.Thorsell, C.H.Arrowsmith, C.Bountra, A.M.Edwards T.Ekblad, J.Weigelt, H.Schuler, Structural Genomics Consortium
compound		source
Molecule: Poly [Adp-Ribose] Polymerase 14 Chain: A Fragment: Macro Domains 1 And 2 (Unp Residues 784-1196) Synonym: Parp-14, B Aggressive Lymphoma Protein 2 Ec: 2.4.2.30 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bal2, Kiaa1268, Parp14 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Prare Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic-Bsa4
symmetry	Space Group: P 2 2 21	R_factor 0.233 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.620 59.940 144.340 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	AR6	enzyme	Transferase E.C.2.4.2.30 BRENDA
Primary reference	Recognition of Mono-ADP-Ribosylated ARTD10 Substrates by ARTD8 Macrodomains., Forst AH, Karlberg T, Herzog N, Thorsell AG, Gross A, Feijs KL, Verheugd P, Kursula P, Nijmeijer B, Kremmer E, Kleine H, Ladurner AG, Schuler H, Luscher B, Structure. 2013 Mar 5;21(3):462-75. doi: 10.1016/j.str.2012.12.019. PMID:23473667

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (3vfq.pdb1.gz) 58 Kb LPC: Ligand-Protein Contacts for 3VFQ CSU: Contacts of Structural Units for 3VFQ Structure Factors (81 Kb) Retrieve 3VFQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VFQ from S2C, [Save to disk] Re-refined 3vfq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VFQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VFQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VFQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vfq_A] [3vfq] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3VFQ: [A1pp ] by SMART

Other resources with information on 3VFQ

Community annotation for 3VFQ at PDBWiki (http://pdbwiki.org)

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