4DA4 Structure of mouse DNMT1 (731-1602) bound to hemimethylated CpG DNA date 2012-01-12
authors Song, J., Patel, D.J.
compound source
symmetry
R_factor
R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand 5CM, C49, CIT, SAH, ZN BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure-based mechanistic insights into DNMT1-mediated maintenance DNA methylation., Song J, Teplova M, Ishibe-Murakami S, Patel DJ, Science. 2012 Feb 10;335(6069):709-12. PMID:22323818
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk]
  • Biological Unit Coordinates (4da4.pdb1.gz) 150 Kb
  • Biological Unit Coordinates (4da4.pdb2.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 4DA4
  • CSU: Contacts of Structural Units for 4DA4
  • Structure Factors (510 Kb)
  • Retrieve 4DA4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DA4 from S2C, [Save to disk]
  • Re-refined 4da4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DA4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DA4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DA4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4da4_A] [4da4_D] [4da4_E] [4da4_F] [4da4_B] [4da4] [4da4_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DA4: [BAH ] by SMART
  • Other resources with information on 4DA4
  • Community annotation for 4DA4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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