4F5D Immune System date May 13, 2012
title Erissting In Complex With Ligand
authors Y.H.Huang, X.Y.Liu, X.D.Su
compound source
Molecule: Transmembrane Protein 173
Chain: A, B
Fragment: Unp Residues 141-379
Synonym: Endoplasmic Reticulum Interferon Stimulator, Eris, Of Irf3 Activation, Hmita, Stimulator Of Interferon Genes P Hsting;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tmem173, Eris, Mita, Sting
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 41
R_factor 0.211 R_Free 0.242
length a length b length c angle alpha angle beta angle gamma
111.850 111.850 35.020 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand C2E, MG enzyme
A, B

Primary referenceThe structural basis for the sensing and binding of cyclic di-GMP by STING., Huang YH, Liu XY, Du XX, Jiang ZF, Su XD, Nat Struct Mol Biol. 2012 Jun 24;19(7):728-30. doi: 10.1038/nsmb.2333. PMID:22728659
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (4f5d.pdb1.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 4F5D
  • CSU: Contacts of Structural Units for 4F5D
  • Structure Factors (71 Kb)
  • Retrieve 4F5D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F5D from S2C, [Save to disk]
  • Re-refined 4f5d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F5D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F5D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4F5D, from MSDmotif at EBI
  • Fold representative 4f5d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f5d] [4f5d_A] [4f5d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4F5D
  • Community annotation for 4F5D at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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