4IJ3 Oxidoreductase Oxidoreductase Inhibitor date Dec 21, 2012
title Oxidoreductase Fragment Of Human Qsox1 In Complex With A Fab From An Anti- Human Qsox1 Antibody
authors D.Fass, I.Grossman
compound source
Molecule: Sulfhydryl Oxidase 1
Chain: A
Fragment: Oxidoreductase Fragment, Unp Residues 33-272
Synonym: Hqsox,Quiescin Q6
Ec: 1.8.3.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Qsox1, Qscn6, Unq2520pro6013
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Light Chain Of Fab Fragment
Chain: B
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Cell: Hybridoma

Molecule: Heavy Chain Of Fab Fragment
Chain: C
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Cell: Hybridoma
symmetry Space Group: P 61
R_factor 0.202 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
209.311 209.311 55.265 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand PO4 enzyme Oxidoreductase E.C.1.8.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (4ij3.pdb1.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 4IJ3
  • CSU: Contacts of Structural Units for 4IJ3
  • Structure Factors (317 Kb)
  • Retrieve 4IJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IJ3 from S2C, [Save to disk]
  • Re-refined 4ij3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IJ3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4IJ3, from MSDmotif at EBI
  • Fold representative 4ij3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ij3_C] [4ij3_A] [4ij3] [4ij3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4IJ3: [IG_like] [IGv ] by SMART
  • Other resources with information on 4IJ3
  • Community annotation for 4IJ3 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science