4J00 Crystal Structure of Fischerella Transcription Factor HetR complexed with 24mer DNA target date
authors Kim, Y., Joachimiak, G., Gornicki, P., Joachimiak, A., MCSG, MCSG, Midwest.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructures of complexes comprised of Fischerella transcription factor HetR with Anabaena DNA targets., Kim Y, Ye Z, Joachimiak G, Videau P, Young J, Hurd K, Callahan SM, Gornicki P, Zhao J, Haselkorn R, Joachimiak A, Proc Natl Acad Sci U S A. 2013 Apr 22. PMID:23610410
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (254 Kb) [Save to disk]
  • Biological Unit Coordinates (4j00.pdb1.gz) 247 Kb
  • LPC: Ligand-Protein Contacts for 4J00
  • CSU: Contacts of Structural Units for 4J00
  • Structure Factors (139 Kb)
  • Retrieve 4J00 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J00 from S2C, [Save to disk]
  • Re-refined 4j00 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4J00 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4J00
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J00, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j00] [4j00_C] [4j00_A] [4j00_D] [4j00_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4J00
  • Community annotation for 4J00 at PDBWiki (http://pdbwiki.org)

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