4J01 Crystal Structure of Fischerella Transcription Factor HetR complexed with 29mer DNA target date
authors Kim, Y., Joachimiak, G., Gornicki, P., Joachimiak, A., MCSG, MCSG, Midwest.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.25
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B


Primary referenceStructures of complexes comprised of Fischerella transcription factor HetR with Anabaena DNA targets., Kim Y, Ye Z, Joachimiak G, Videau P, Young J, Hurd K, Callahan SM, Gornicki P, Zhao J, Haselkorn R, Joachimiak A, Proc Natl Acad Sci U S A. 2013 Apr 22. PMID:23610410
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (523 Kb) [Save to disk]
  • Biological Unit Coordinates (4j01.pdb1.gz) 256 Kb
  • Biological Unit Coordinates (4j01.pdb2.gz) 258 Kb
  • LPC: Ligand-Protein Contacts for 4J01
  • CSU: Contacts of Structural Units for 4J01
  • Structure Factors (742 Kb)
  • Retrieve 4J01 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J01 from S2C, [Save to disk]
  • Re-refined 4j01 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J01 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J01
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J01, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j01_C] [4j01_B] [4j01_D] [4j01] [4j01_G] [4j01_A] [4j01_F] [4j01_H] [4j01_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4J01
  • Community annotation for 4J01 at PDBWiki (http://pdbwiki.org)

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