4NYT date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ACT, CA, FUC, MAN, NAG, PC, PO4 enzyme
Primary referenceHuman L-ficolin recognizes phosphocholine moieties of pneumococcal teichoic Acid., Vassal-Stermann E, Lacroix M, Gout E, Laffly E, Pedersen CM, Martin L, Amoroso A, Schmidt RR, Zahringer U, Gaboriaud C, Di Guilmi AM, Thielens NM, J Immunol. 2014 Dec 1;193(11):5699-708. doi: 10.4049/jimmunol.1400127. Epub 2014 , Oct 24. PMID:25344472
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk]
  • Biological Unit Coordinates (4nyt.pdb1.gz) 221 Kb
  • LPC: Ligand-Protein Contacts for 4NYT
  • CSU: Contacts of Structural Units for 4NYT
  • Structure Factors (679 Kb)
  • Retrieve 4NYT in mmCIF format [Save to disk]
  • Re-refined 4nyt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NYT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nyt] [4nyt_A] [4nyt_B] [4nyt_C]
  • SWISS-PROT database:
  • Domain found in 4NYT: [FBG ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science