4RER Transferase date Sep 23, 2014
title Crystal Structure Of The Phosphorylated Human Alpha1 Beta2 G Holo-Ampk Complex Bound To Amp And Cyclodextrin
authors X.E.Zhou, J.Ke, X.Li, L.Wang, X.Gu, P.W.De Waal, M.H.E.Tan, D.Wang, H.E.Xu, K.Melcher
compound source
Molecule: 5'-Amp-Activated Protein Kinase Catalytic Subunit
Chain: A
Fragment: Human Ampk Alpha1 Subunit [G11-Q550]
Synonym: Ampk Subunit Alpha-1, Acetyl-Coa Carboxylase Kinas Kinase, Hydroxymethylglutaryl-Coa Reductase Kinase, Hmgcr K Tau-Protein Kinase Prkaa1;
Ec: 2.7.11.1, 2.7.11.27, 2.7.11.31, 2.7.11.26
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ampk1, Human Holo-Ampk Alpha1 Subunit, Prkaa1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28

Molecule: 5'-Amp-Activated Protein Kinase Subunit Beta-2
Chain: B
Fragment: Human Ampk Beta2 Subunit [A76-I272]
Synonym: Ampk Subunit Beta-2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Human Holo-Ampk Beta2 Subunit, Prkab2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28

Molecule: 5'-Amp-Activated Protein Kinase Subunit Gamma-1
Chain: G
Fragment: Human Ampk Gamma1 Subunit [S24-G327]
Synonym: Ampk Gamma1, Ampk Subunit Gamma-1, Ampkg
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Human Holo-Ampk Gamma1 Subunit, Prkag1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 32 2 1
R_factor 0.224 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.566 132.566 195.392 90.00 90.00 120.00
method X-Ray Diffractionresolution 4.05 Å
ligand AMP, BCD, EPE, SEP, STU, TPO enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • histone serine kinase activi...
  • positive regulation of autop...

  • B


    G
  • cAMP-dependent protein kinas...


  • Primary referenceStructural basis of AMPK regulation by adenine nucleotides and glycogen., Li X, Wang L, Zhou XE, Ke J, de Waal PW, Gu X, Tan MH, Wang D, Wu D, Xu HE, Melcher K, Cell Res. 2014 Nov 21. doi: 10.1038/cr.2014.150. PMID:25412657
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (340 Kb) [Save to disk]
  • Biological Unit Coordinates (4rer.pdb1.gz) 332 Kb
  • LPC: Ligand-Protein Contacts for 4RER
  • CSU: Contacts of Structural Units for 4RER
  • Structure Factors (244 Kb)
  • Retrieve 4RER in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RER from S2C, [Save to disk]
  • Re-refined 4rer structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RER in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RER
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4RER, from MSDmotif at EBI
  • Fold representative 4rer from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rer_B] [4rer] [4rer_A] [4rer_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4RER: [AMPKBI] [CBS] [S_TKc ] by SMART
  • Other resources with information on 4RER
  • Community annotation for 4RER at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science