4SBV Virus date Apr 01, 1985
title The Refinement Of Southern Bean Mosaic Virus In Reciprocal S
authors M.G.Rossmann
compound source
Molecule: Southern Bean Mosaic Virus Coat Protein
Chain: A, B, C
Engineered: Yes
Organism_scientific: Southern Bean Mosaic Virus
Organism_taxid: 12139
Strain: Cow Pea Strain
symmetry Space Group: H 3 2
R_factor 0.254 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
334.300 334.300 757.500 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand CA enzyme
note 4SBV supersedes 3SBV, 2SBV, 1SBV
related structures by homologous chain: 1SMV
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (4sbv.pdb1.gz) 5596 Kb
  • LPC: Ligand-Protein Contacts for 4SBV
  • CSU: Contacts of Structural Units for 4SBV
  • Likely Quarternary Molecular Structure file(s) for 4SBV
  • Structure Factors (4344 Kb)
  • Retrieve 4SBV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4SBV from S2C, [Save to disk]
  • View 4SBV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4SBV
  • VIPERdb: visual, structural and computational analysis of 4SBV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4SBV, from MSDmotif at EBI
  • Genome occurence of 4SBV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d4sbva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d4sbvb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d4sbvc_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 4sbv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4sbv_B] [4sbv_C] [4sbv_A] [4sbv]
  • SWISS-PROT database: [P03607]
  • Domain organization of [CAPSD_SBMV] by SWISSPFAM
  • Other resources with information on 4SBV
  • Community annotation for 4SBV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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