OCA Atlas for 5AGV

5AGV

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ACE, BU3, CA, MLU, MP8, MVA, NA, NZC, PH6

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B	DNA-directed DNA polymerase ... 3'-5' exonuclease activity

Primary reference

Antibiotics. Targeting DnaN for tuberculosis therapy using novel griselimycins., Kling A, Lukat P, Almeida DV, Bauer A, Fontaine E, Sordello S, Zaburannyi N, Herrmann J, Wenzel SC, Konig C, Ammerman NC, Barrio MB, Borchers K, Bordon-Pallier F, Bronstrup M, Courtemanche G, Gerlitz M, Geslin M, Hammann P, Heinz DW, Hoffmann H, Klieber S, Kohlmann M, Kurz M, Lair C, Matter H, Nuermberger E, Tyagi S, Fraisse L, Grosset JH, Lagrange S, Muller R, Science. 2015 Jun 5;348(6239):1106-12. doi: 10.1126/science.aaa4690. PMID:26045430

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]

Biological Unit Coordinates (5agv.pdb1.gz) 271 Kb

Biological Unit Coordinates (5agv.pdb2.gz) 271 Kb

LPC: Ligand-Protein Contacts for 5AGV

CSU: Contacts of Structural Units for 5AGV

Structure Factors (4387 Kb)

Retrieve 5AGV in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5AGV from S2C, [Save to disk]

Re-refined 5agv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AGV in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5agv_B] [5agv_A] [5agv_C] [5agv_D] [5agv]

SWISS-PROT database:

Domain found in 5AGV: [POL3Bc ] by SMART

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