5CZV Immune System date Aug 01, 2015
title Crystal Structure Of Notch3 Nrr In Complex With 20350 Fab
authors T.Hu, C.Fryer, R.Chopra, K.Clark
compound source
Molecule: Neurogenic Locus Notch Homolog Protein 3
Chain: A
Fragment: Negative Regulatory Region (Unp Residues 1378-164
Synonym: Notch 3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Notch3
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293-Fs
Expression_system_vector_type: Plasmid

Molecule: Fab 20350 Heavy Chain
Chain: H
Synonym: Igg20350 Heavy Chain, Nvp-Lmw976 Heavy Chain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_vector_type: Plasmid

Molecule: Fab 20350 Light Chain
Chain: L
Synonym: Igg20350 Light Chain, Nvp-Lmw976 Light Chain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.204 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.917 104.349 92.849 90.00 113.17 90.00
method X-Ray Diffractionresolution 3.19 Å
ligand CA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCharacterization of activating mutations of NOTCH3 in T-cell acute lymphoblastic leukemia and anti-leukemic activity of NOTCH3 inhibitory antibodies., Bernasconi-Elias P, Hu T, Jenkins D, Firestone B, Gans S, Kurth E, Capodieci P, Deplazes-Lauber J, Petropoulos K, Thiel P, Ponsel D, Hee Choi S, LeMotte P, London A, Goetcshkes M, Nolin E, Jones MD, Slocum K, Kluk MJ, Weinstock DM, Christodoulou A, Weinberg O, Jaehrling J, Ettenberg SA, Buckler A, Blacklow SC, Aster JC, Fryer CJ, Oncogene. 2016 May 9. doi: 10.1038/onc.2016.133. PMID:27157619
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (5czv.pdb1.gz) 213 Kb
  • LPC: Ligand-Protein Contacts for 5CZV
  • CSU: Contacts of Structural Units for 5CZV
  • Structure Factors (205 Kb)
  • Retrieve 5CZV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CZV from S2C, [Save to disk]
  • Re-refined 5czv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CZV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CZV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5czv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5czv] [5czv_A] [5czv_L] [5czv_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5CZV: [IG_like] [IGv] [NL] [NOD] [NODP ] by SMART
  • Other resources with information on 5CZV
  • Community annotation for 5CZV at PDBWiki (http://pdbwiki.org)

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