5K8J		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GOL, MSE	enzyme
Gene	CC ; CC
Gene Ontology	Chain Function Process Component A, D B, C nuclease activity ribonuclease activity toxin activity
Primary reference	Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding., Bendtsen KL, Xu K, Luckmann M, Winther KS, Shah SA, Pedersen CN, Brodersen DE, Nucleic Acids Res. 2016 Dec 19. pii: gkw1266. doi: 10.1093/nar/gkw1266. PMID:27998932

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk] Biological Unit Coordinates (5k8j.pdb1.gz) 407 Kb LPC: Ligand-Protein Contacts for 5K8J CSU: Contacts of Structural Units for 5K8J Structure Factors (911 Kb) Retrieve 5K8J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5K8J from S2C, [Save to disk] Re-refined 5k8j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5K8J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5k8j_B] [5k8j_A] [5k8j_D] [5k8j_C] [5k8j] SWISS-PROT database:

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