5LSJ Cell Cycle date Sep 02, 2016
title Crystal Structure Of The Human Kinetochore Mis12-Cenp-C Delt Complex
authors I.R.Vetter, A.Petrovic, J.Keller, Y.Liu
compound source
Molecule: Protein Mis12 Homolog
Chain: A, C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mis12
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codon-Plus-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst39

Molecule: Polyamine-Modulated Factor 1
Chain: B, E
Fragment: Unp Residues 31-205
Synonym: Pmf-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pmf1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codon-Plus-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst39

Molecule: Kinetochore-Associated Protein Dsn1 Homolog
Chain: D, F
Fragment: Unp Residues 186-356
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dsn1, C20orf172, Mis13
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codon-Plus-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst39

Molecule: Kinetochore-Associated Protein Nsl1 Homolog
Chain: N, G
Fragment: Unp Residues 92-206
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nsl1, C1orf48, Dc31, Dc8, Mis14
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codon-Plus-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst39

Molecule: Centromere Protein C
Chain: P, Q
Fragment: Unp Residues 1-71
Synonym: Cenp-C,Centromere Autoantigen C,Centromere Protein C 1,Interphase Centromere Complex Protein 7;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cenpc, Cenpc1, Icen7
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codon-Plus-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst39
symmetry Space Group: P 1 21 1
R_factor 0.246 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.160 156.400 76.000 90.00 102.82 90.00
method X-Ray Diffractionresolution 3.25 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


E, B


F, D


N, G


P, Q


Primary referenceStructure of the MIS12 Complex and Molecular Basis of Its Interaction with CENP-C at Human Kinetochores., Petrovic A, Keller J, Liu Y, Overlack K, John J, Dimitrova YN, Jenni S, van Gerwen S, Stege P, Wohlgemuth S, Rombaut P, Herzog F, Harrison SC, Vetter IR, Musacchio A, Cell. 2016 Nov 3;167(4):1028-1040.e15. doi: 10.1016/j.cell.2016.10.005. Epub 2016, Oct 27. PMID:27881301
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (5lsj.pdb1.gz) 99 Kb
  • Biological Unit Coordinates (5lsj.pdb2.gz) 99 Kb
  • CSU: Contacts of Structural Units for 5LSJ
  • Structure Factors (530 Kb)
  • Retrieve 5LSJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LSJ from S2C, [Save to disk]
  • Re-refined 5lsj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LSJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LSJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5lsj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lsj_G] [5lsj_Q] [5lsj_F] [5lsj_C] [5lsj_A] [5lsj_P] [5lsj_D] [5lsj_E] [5lsj] [5lsj_B] [5lsj_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LSJ
  • Community annotation for 5LSJ at PDBWiki (http://pdbwiki.org)

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