5MKG PA3825-EAL Ca-CdG Structure date
authors Horrell, S., Bellini, D., Strange, R., Wagner, A., Walsh, M.
compound source
symmetry
R_factor
R_Free 0.2850
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.44
ligand C2E, CA enzyme
Gene AO964
Primary referenceDimerisation induced formation of the active site and the identification of three metal sites in EAL-phosphodiesterases., Bellini D, Horrell S, Hutchin A, Phippen CW, Strange RW, Cai Y, Wagner A, Webb JS, Tews I, Walsh MA, Sci Rep. 2017 Feb 10;7:42166. doi: 10.1038/srep42166. PMID:28186120
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (5mkg.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (5mkg.pdb2.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 5MKG
  • CSU: Contacts of Structural Units for 5MKG
  • Structure Factors (591 Kb)
  • Retrieve 5MKG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MKG from S2C, [Save to disk]
  • Re-refined 5mkg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5MKG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MKG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mkg] [5mkg_A] [5mkg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MKG
  • Community annotation for 5MKG at PDBWiki (http://pdbwiki.org)

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