OCA Atlas for 5MR6

5MR6

Oxidoreductase

date

Dec 21, 2016

title

Xiaf From Streptomyces Sp. In Complex With Fadh2 And Glycero

authors

S.Kugel, M.Baunach, P.Baer, M.Ishida-Ito, S.Sundaram, Z.Xu, M.Grol C.Hertweck

compound

source

Molecule: Xiaf Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X;
Engineered: Yes

Organism_scientific: Streptomyces Sp.
Organism_taxid: 1931
Gene: Xiaf
Expression_system: Escherichia Coli
Expression_system_taxid: 562

symmetry

Space Group: P 1

R_factor

0.198

R_Free

0.229

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
166.930	167.090	200.940	89.96	90.18	119.82

method

X-Ray Diffraction

resolution

2.40 Å

ligand

FAD, GOL

enzyme

Gene
Ontology

Chain	Function	Process	Component
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3171 Kb) [Save to disk]

Biological Unit Coordinates (5mr6.pdb1.gz) 541 Kb

Biological Unit Coordinates (5mr6.pdb2.gz) 538 Kb

Biological Unit Coordinates (5mr6.pdb3.gz) 538 Kb

Biological Unit Coordinates (5mr6.pdb4.gz) 540 Kb

Biological Unit Coordinates (5mr6.pdb5.gz) 537 Kb

Biological Unit Coordinates (5mr6.pdb6.gz) 542 Kb

LPC: Ligand-Protein Contacts for 5MR6

CSU: Contacts of Structural Units for 5MR6

Structure Factors (20386 Kb)

Retrieve 5MR6 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5MR6 from S2C, [Save to disk]

Re-refined 5mr6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5MR6 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5MR6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mr6_I] [5mr6_A] [5mr6_D] [5mr6_E] [5mr6_H] [5mr6_K] [5mr6_C] [5mr6_L] [5mr6_X] [5mr6_S] [5mr6_V] [5mr6_N] [5mr6_J] [5mr6_M] [5mr6_T] [5mr6_P] [5mr6_W] [5mr6_B] [5mr6_F] [5mr6_U] [5mr6_G] [5mr6_O] [5mr6_R] [5mr6_Q]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 5MR6

Community annotation for 5MR6 at PDBWiki (http://pdbwiki.org)

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