5NFY	Transferase	date	Mar 16, 2017
title	Sars-Cov Nsp10nsp14 Dynamic Complex
authors	F.Ferron, L.Gluais, C.Vonrhein, G.Bricogne, B.Canard, I.Imbert
compound		source
Molecule: Polyprotein 1ab Chain: A, B, C, D Engineered: Yes		Organism_scientific: Sars Coronavirus Frankfurt 1 Organism_taxid: 229992 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_plasmid: Pdest14
Molecule: Polyprotein 1ab Chain: M, N, O, P Engineered: Yes		Organism_scientific: Sars Coronavirus Frankfurt 1 Organism_taxid: 229992 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_plasmid: Pdest14
symmetry	Space Group: P 21 21 2	R_factor 0.193 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 185.881 189.786 196.245 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.38 Å
ligand	PEG, ZN	enzyme
Gene Ontology	Chain Function Process Component O, M, N, P
Primary reference	Structural and molecular basis of mismatch correction and ribavirin excision from coronavirus RNA., Ferron F, Subissi L, Silveira De Morais AT, Le NTT, Sevajol M, Gluais L, Decroly E, Vonrhein C, Bricogne G, Canard B, Imbert I, Proc Natl Acad Sci U S A. 2017 Dec 26. pii: 1718806115. doi:, 10.1073/pnas.1718806115. PMID:29279395

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (432 Kb) [Save to disk] Biological Unit Coordinates (5nfy.pdb1.gz) 111 Kb Biological Unit Coordinates (5nfy.pdb2.gz) 111 Kb Biological Unit Coordinates (5nfy.pdb3.gz) 112 Kb Biological Unit Coordinates (5nfy.pdb4.gz) 111 Kb LPC: Ligand-Protein Contacts for 5NFY CSU: Contacts of Structural Units for 5NFY Structure Factors (2062 Kb) Retrieve 5NFY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NFY from S2C, [Save to disk]

View 5NFY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5NFY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5nfy_C] [5nfy_A] [5nfy_P] [5nfy_N] [5nfy_B] [5nfy_D] [5nfy_O] [5nfy_M] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5NFY at PDBWiki (http://pdbwiki.org)

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