5NX2 Membrane Protein date May 09, 2017
title Crystal Structure Of Thermostabilised Full-Length Glp-1r In With A Truncated Peptide Agonist At 3.7 A Resolution
authors M.Rappas, A.Jazayeri, A.J.H.Brown, J.Kean, J.C.Errey, N.Robertson Vandal, S.P.Andrews, M.Congreve, A.Bortolato, J.S.Mason, A.H.Bai I.Teobald, A.S.Dore, M.Weir, R.M.Cooke, F.H.Marshall
compound source
Molecule: Glucagon-Like Peptide 1 Receptor
Chain: A
Fragment: Unp Residues 24-432
Synonym: Glp-1r
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Glp1r
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1-Hm

Molecule: Truncated Peptide Agonist
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 31 2 1
R_factor 0.285 R_Free 0.334
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.435 94.435 163.905 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.70 Å
ligand 9DK, 9DQ, 9DT, 9DW, 9DZ, NAG, SOG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • glucagon receptor activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (5nx2.pdb1.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 5NX2
  • CSU: Contacts of Structural Units for 5NX2
  • Structure Factors (95 Kb)
  • Retrieve 5NX2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NX2 from S2C, [Save to disk]
  • Re-refined 5nx2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5NX2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NX2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nx2_A] [5nx2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NX2
  • Community annotation for 5NX2 at PDBWiki (http://pdbwiki.org)

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