5OY0 Photosynthesis date Sep 07, 2017
title Structure Of Synechocystis Photosystem I Trimer At 2.5a Reso
authors N.Nelson, T.Malavath, I.Caspy
compound source
Molecule: Photosystem I P700 Chlorophyll A Apoprotein A1
Chain: A, a
Synonym: Psaa
Ec: 1.97.1.12
 Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I P700 Chlorophyll A Apoprotein A2
Chain: B, 2
Synonym: Psab
Ec: 1.97.1.12
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Iron-Sulfur Center
Chain: C, 3
Synonym: 9 Kda Polypeptide,Psi-C,Photosystem I Subunit Vii,
Ec: 1.97.1.12
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Reaction Center Subunit II
Chain: D, d
Synonym: Photosystem I 16 Kda Polypeptide,Psi-D
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Reaction Center Subunit Iv
Chain: E, 5
Synonym: Photosystem I 8.1 Kda Protein,P30 Protein
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Reaction Center Subunit III
Chain: F, f, 6
Synonym: Psi-F
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Reaction Center Subunit Viii
Chain: I, I
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Reaction Center Subunit Ix
Chain: J, j, 7
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Reaction Center Subunit Psak 2
Chain: K
Synonym: Photosystem I Subunit X 2
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Reaction Center Subunit Xi
Chain: L, l
Synonym: Psi Subunit V,Psi-L
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Reaction Center Subunit Xii
Chain: M, m, 9
Synonym: Psi-M
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I P700 Chlorophyll A Apoprotein A2
Chain: b
Synonym: Psab
Ec: 1.97.1.12
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Iron-Sulfur Center
Chain: c
Synonym: 9 Kda Polypeptide,Psi-C,Photosystem I Subunit Vii,
Ec: 1.97.1.12
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Reaction Center Subunit Iv
Chain: e
Synonym: Photosystem I 8.1 Kda Protein,P30 Protein
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Reaction Center Subunit Psak 2
Chain: k
Synonym: Photosystem I Subunit X 2
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I P700 Chlorophyll A Apoprotein A1
Chain: 1
Synonym: Psaa
Ec: 1.97.1.12
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Reaction Center Subunit II
Chain: 4
Synonym: Photosystem I 16 Kda Polypeptide,Psi-D
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Reaction Center Subunit Viii
Chain: h
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Reaction Center Subunit Psak 2
Chain: 8
Synonym: Photosystem I Subunit X 2
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148

Molecule: Photosystem I Reaction Center Subunit Xi
Chain
Synonym: Psi Subunit V,Psi-L
Organism_scientific: Synechocystis Sp. Pcc 6803
Organism_taxid: 1148
symmetry Space Group: P 1 21 1
R_factor 0.228 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
212.170 137.622 225.095 90.00 116.74 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 45D, ACT, BCR, CA, CL, CLA, DGD, ECH, EQ3, LHG, LMG, LMT, MG, PQN, SF4, SQD, ZEX enzyme Oxidoreductase E.C.1.97.1.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
0L, l


2, B, b
  • electron transfer activity


    • 7, j, J


    E, e, 5


    F, f, 6


    I, h, i


    K, k, 8


    M, m, 9


    a, 1, A
  • electron transfer activity


    • c, C, 3


    d, D, 4


    Primary referenceStructure and function of wild-type and subunit-depleted photosystem I in Synechocystis., Malavath T, Caspy I, Netzer-El SY, Klaiman D, Nelson N, Biochim Biophys Acta. 2018 Feb 4. pii: S0005-2728(18)30018-5. doi:, 10.1016/j.bbabio.2018.02.002. PMID:29414678
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2730 Kb) [Save to disk]
  • Biological Unit Coordinates (5oy0.pdb1.gz) 2550 Kb
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    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oy0_1] [5oy0_b] [5oy0_E] [5oy0_M] [5oy0_A] [5oy0_L] [5oy0_a] [5oy0_j] [5oy0_J] [5oy0_0] [5oy0_5] [5oy0_4] [5oy0_m] [5oy0_B] [5oy0_I] [5oy0_k] [5oy0_D] [5oy0_h] [5oy0_8] [5oy0_9] [5oy0_i] [5oy0_3] [5oy0_e] [5oy0_6] [5oy0_F] [5oy0_d] [5oy0_c] [5oy0_2] [5oy0_C] [5oy0_7] [5oy0_l] [5oy0_K] [5oy0_f]
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