OCA Atlas for 5OY0

5OY0

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

45D, ACT, BCR, CA, CL, CLA, DGD, ECH, EQ3, LHG, LMG, LMT, MG, PQN, SF4, SQD, ZEX

enzyme

Gene
Ontology

Chain	Function	Process	Component
0l, L
3, c, C
4, D, d
A, a, 1	electron transfer activity
E, 5, e
F, f, 6
J, j, 7
K, k, 8
b, 2, B	electron transfer activity
h, I, i
m, M, 9

Primary reference

Structure and function of wild-type and subunit-depleted photosystem I in Synechocystis., Malavath T, Caspy I, Netzer-El SY, Klaiman D, Nelson N, Biochim Biophys Acta. 2018 Feb 4. pii: S0005-2728(18)30018-5. doi:, 10.1016/j.bbabio.2018.02.002. PMID:29414678

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2667 Kb) [Save to disk]

Biological Unit Coordinates (5oy0.pdb1.gz) 2496 Kb

LPC: Ligand-Protein Contacts for 5OY0

CSU: Contacts of Structural Units for 5OY0

Structure Factors (11305 Kb)

Retrieve 5OY0 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5OY0 from S2C, [Save to disk]

View 5OY0 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5oy0_a] [5oy0_0] [5oy0_1] [5oy0_2] [5oy0_3] [5oy0_4] [5oy0_5] [5oy0_6] [5oy0_7] [5oy0_M] [5oy0_8] [5oy0_9] [5oy0_A] [5oy0_B] [5oy0_C] [5oy0_D] [5oy0_E] [5oy0_F] [5oy0_I] [5oy0_J] [5oy0_K] [5oy0_L] [5oy0_b] [5oy0_c] [5oy0_d] [5oy0_e] [5oy0_f] [5oy0_h] [5oy0_i] [5oy0_j] [5oy0_k] [5oy0_l] [5oy0_m]

SWISS-PROT database:

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