5THP date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL, GOL, MG, NA, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
Q, B, D, G, J, P, K, N, M, A, E, H
  • toxin activity


    • Primary referenceDramatic and concerted conformational changes enable rhodocetin to block alpha2beta1 integrin selectively., Eble JA, McDougall M, Orriss GL, Niland S, Johanningmeier B, Pohlentz G, Meier M, Karrasch S, Estevao-Costa MI, Martins Lima A, Stetefeld J, PLoS Biol. 2017 Jul 13;15(7):e2001492. doi: 10.1371/journal.pbio.2001492., eCollection 2017 Jul. PMID:28704364
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (906 Kb) [Save to disk]
  • Biological Unit Coordinates (5thp.pdb1.gz) 156 Kb
  • Biological Unit Coordinates (5thp.pdb2.gz) 157 Kb
  • Biological Unit Coordinates (5thp.pdb3.gz) 156 Kb
  • Biological Unit Coordinates (5thp.pdb4.gz) 152 Kb
  • Biological Unit Coordinates (5thp.pdb5.gz) 159 Kb
  • Biological Unit Coordinates (5thp.pdb6.gz) 160 Kb
  • LPC: Ligand-Protein Contacts for 5THP
  • CSU: Contacts of Structural Units for 5THP
  • Structure Factors (2434 Kb)
  • Retrieve 5THP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5THP from S2C, [Save to disk]
  • Re-refined 5thp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5THP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5thp_A] [5thp_B] [5thp_C] [5thp_D] [5thp_E] [5thp_F] [5thp_G] [5thp_H] [5thp_I] [5thp_J] [5thp_K] [5thp_L] [5thp_M] [5thp_N] [5thp_O] [5thp_P] [5thp_Q] [5thp_R]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science